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SequenceAnnotation DRAFT Profile

Version: 0.7-DRAFT (05 July 2021)


If you spot any errors or omissions with this type, please file an issue in our GitHub.


Key to specification table

CD = Cardinality

Property Expected Type Description CD Controlled Vocabulary Example
Marginality: Minimum.
@context URL Used to provide the context (namespaces) for the JSON-LD file.
Not needed in other serialisations.
ONE
@type Text Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism.
While it is permissible to provide multiple types, it is preferred to use a single type.
MANY Schema.org, Bioschemas
@id IRI Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. ONE
dct:conformsTo IRI Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used.
Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example.
ONE Bioschemas profile versioned URL
sequenceLocation SequenceRange
Schema:

A range/position location where this annotation or BioChemEntity is located reagrding another BioChemEntity, for instance a BioChemStructure in a Protein.


MANY

FALDO may be used

Marginality: Recommended.
creationMethod PropertyValue
Text
URL
Schema:

Method used to create or obtain this annotation or BioChemEntity; please use PropertyValue if you want to include any evidence.


ONE
description Text
Schema:

A description of the item.


ONE
image ImageObject
URL
Schema:

An image of the item. This can be a URL or a fully described ImageObject.


MANY
name Text
Schema:

The name of the item.


ONE
sameAs URL
Schema:

URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website.


Bioschemas:

Link to any resource other than the Record and the official webpage, for instance a Wikipedia page.

MANY
sequenceOrientation Integer
Schema:

One of 1, 0 or -1.


sequenceValue Text
URL
Schema:

-


url URL
Schema:

URL of the item.


Bioschemas:

Link to the official webpage associated to this entity

ONE
Marginality: Optional.
alternateName Text
Schema:

An alias for the item.


MANY
hasBioChemEntityPart BioChemEntity
Schema:

Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property: isPartOfBioChemEntity.


MANY
hasRepresentation PropertyValue
Text
URL
Schema:

A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image.


MANY
isLocatedInSubcellularLocation DefinedTerm
PropertyValue
URL
Schema:

Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence.


MANY

Any URL to a GO cellular_component

isPartOfBioChemEntity BioChemEntity
URL
Schema:

Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: hasBioChemEntityPart.


MANY
valueReference DefinedTerm
Enumeration
PropertyValue
QualitativeValue
QuantitativeValue
StructuredValue
Text
URL
Schema:

A pointer to a secondary value that provides additional information on the original value, e.g. a reference temperature.