SequenceAnnotation DRAFT Profile
Version: 0.7-DRAFT (05 July 2021)
If you spot any errors or omissions with this type, please file an issue in our GitHub.
You can read the release version of this specification here.
Key to specification table
- Green properties/types are proposed by Bioschemas, or indicate proposed changes by Bioschemas to Schema.org
- Red properties/types exist in the core of Schema.org
- Blue properties/types exist in the pending area of Schema.org
- Black properties/types are reused from external vocabularies/ontologies
CD = Cardinality
| Property | Expected Type | Description | CD | Controlled Vocabulary | Example |
|---|---|---|---|---|---|
| Marginality: Minimum. | |||||
| @context | URL | Used to provide the context (namespaces) for the JSON-LD file. Not needed in other serialisations. |
ONE | ||
| @type | Text | Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism. While it is permissible to provide multiple types, it is preferred to use a single type. |
MANY | Schema.org, Bioschemas | |
| @id | IRI | Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. | ONE | ||
| dct:conformsTo | IRI | Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used. Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example. |
ONE | Bioschemas profile versioned URL | |
| sequenceLocation |
SequenceRange |
Schema: A range/position location where this annotation or BioChemEntity is located reagrding another BioChemEntity, for instance a BioChemStructure in a Protein. |
MANY | FALDO may be used |
|
| Marginality: Recommended. | |||||
| creationMethod |
PropertyValue Text URL |
Schema: Method used to create or obtain this annotation or BioChemEntity; please use PropertyValue if you want to include any evidence. |
ONE | ||
| description |
Text |
Schema: A description of the item. |
ONE | ||
| image |
ImageObject URL |
Schema: An image of the item. This can be a URL or a fully described ImageObject. |
MANY | ||
| name |
Text |
Schema: The name of the item. |
ONE | ||
| sameAs |
URL |
Schema: URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website. Bioschemas: Link to any resource other than the Record and the official webpage, for instance a Wikipedia page. |
MANY | ||
| sequenceOrientation |
Integer |
Schema: One of 1, 0 or -1. |
|||
| sequenceValue |
Text URL |
Schema: - |
|||
| url |
URL |
Schema: URL of the item. Bioschemas: Link to the official webpage associated to this entity |
ONE | ||
| Marginality: Optional. | |||||
| alternateName |
Text |
Schema: An alias for the item. |
MANY | ||
| hasBioChemEntityPart |
BioChemEntity |
Schema: Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property: isPartOfBioChemEntity. |
MANY | ||
| hasRepresentation |
PropertyValue Text URL |
Schema: A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image. |
MANY | ||
| isLocatedInSubcellularLocation |
DefinedTerm PropertyValue URL |
Schema: Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence. |
MANY | Any URL to a GO cellular_component |
|
| isPartOfBioChemEntity |
BioChemEntity URL |
Schema: Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: hasBioChemEntityPart. |
MANY | ||
| valueReference |
DefinedTerm Enumeration PropertyValue QualitativeValue QuantitativeValue StructuredValue Text URL |
Schema: A pointer to a secondary value that provides additional information on the original value, e.g. a reference temperature. |
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