Live Deploys
Below we list the sites that use Bioschemas markup to describe what they are offering. We provide a direct link to the site, an example deployment page, a link to test the markup syntax using the Schema.org Markup Validation tool (SMV), and also a link to the results of using the Bioschemas Markup Scraper and Extractor tool (BMUSE). The links to the Schema.org Markup Validation tool and BMUSE show one example page from the site; however, many more may exist.
Note that when using the Schema.org Markup Validator, you may encounter some error warnings for types and properties. These should correspond to the types and properties that are being proposed by Bioschemas as extensions to the Schema.org vocabulary.
If your Bioschemas compliant site is not listed below, please add it to our list of live deploys and create a pull request to have your site added. Alternatively, complete our form to give details of your deployment.
Sites Implementing Bioschemas's Markup
- 90 sites with Bioschemas markup
- 179 profile deployments
Implemented Profiles
- Description: Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species. It provides an intuitive answer to the question "where is a gene expressed?" and supports research in cancer and agriculture as well as evolutionary biology.
- Sitemap: https://bgee.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Sitemap: https://bio.tools/api/sitemap.xml
- DataDump: https://raw.githubusercontent.com/bio-tools/content/master/datasets/bioschemas-dump.ttl
- Nodes: DK, FR, ES
Implemented Profiles
- Description: Lecture on biomedical semantics, information retrieval and knowledge discovery
- Sitemap: https://zbmed-semtec.github.io/BioMedSem-IR-KD/sitemap
Implemented Profiles
- Keywords: DDR
- Sitemap: https://www.ebi.ac.uk/biosamples/sitemap.xml
- Nodes: EBI
Implemented Profiles
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
Implemented Profiles
- Keywords: RIR
- Sitemap: https://bridgedb.github.io/sitemap.xml
- Nodes: NL
Implemented Profiles
- Description: A mirror of ChEMBL content captured using Bioschemas generated from ChEMBL-RDF hosted by Maastricht University. See GitHub repo for more details.
- DataDump: https://github.com/ammar257ammar/SWAT4HCLS2022-ChEMBL-bioschemas-mapping/releases/download/v1.0.0/json-ld-output.zip
- Nodes: NL
Implemented Profiles
Implemented Profiles
- Description: Bringing together relevant datasets related to COVID-19 for sharing and analysis in an effort to accelerate coronavirus research.
- Sitemap: https://www.covid19dataportal.org/sitemap.xml
- Nodes: EBI
Implemented Profiles
Implemented Profiles
- Description: DaMaLOS is a workshop about Research data and objects management for Linked Open Science, running since 2020 and co-located with ISWC
- Sitemap: https://zbmed.github.io/damalos/sitemap.xml
Implemented Profiles
- Description: DisProt is a database of intrinsically disordered proteins. Disordered regions are manually curated from literature. DisProt annotations cover both structural and functional aspects of disorder detected by specific experimental methods. Annotation concepts and detection methods are encoded in the Disorder Ontology.
- Sitemap: https://disprot.org/sitemap.xml
- Nodes: IT
Implemented Profiles
- Description: In this lesson we will introduce the subject of good practices via the DOME recommendations when sharing supervised machine learning approaches with peers
- Sitemap: https://zbmed-semtec.github.io/dome-galaxy-training/sitemap.xml
Implemented Profiles
- Description: The European Bank for induced Pluripotent Stem Cells (EBiSC) is a not-for-profit hiPSC repository which collects, banks and distributes quality-assured and ethically sourced, disease relevant, research-grade hiPSC lines and data to academic and commercial researchers worldwide.
- Sitemap: https://ebisc.org/sitemap.xml
Implemented Profiles
- Description: To enable EMBL to deliver world-leading training in bioinformatics and scientific service provision to the research community, empowering scientists at all career stages to make the most of biological data, and strengthening bioinformatics capacity across the globe.
- Nodes: EBI
Implemented Profiles
- Description: Various tutorials developed by or during the EC FP7 project eNanoMapper about ontology development, regression modelling, and pathway analysis.
- Sitemap: https://enanomapper.github.io/tutorials/sitemap.xml
- Nodes: NL
Implemented Profiles
- Keywords: RIR
- Sitemap: https://fairsharing.org/sitemap.xml
- Nodes: UK
Implemented Profiles
- Sitemap: https://www.france-bioinformatique.fr/sitemap.xml
- Nodes: FR
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
Implemented Profiles
- Description: hPSCreg® is a freely accessible global registry for human pluripotent stem cell lines (hPSC lines). The registry allows searching for cell lines and for information available about these cell lines. New cell lines can be registered and information to already registered cell lines can be added.
- Sitemap: https://hpscreg.eu/sitemap.xml
Implemented Profiles
- Keywords: CDR
- Description: Classification of protein families
- Sitemap: https://www.ebi.ac.uk/interpro/sitemap/interpro.sitemap.txt
- Nodes: EBI
Implemented Profiles
- Description: Inhibitors of Protein-Protein Interaction Database
- Sitemap: https://ippidb.pasteur.fr/sitemap.xml
- Nodes: FR
Implemented Profiles
- Sitemap: https://massbank.eu/MassBank/sitemapindex.xml
- DataDump: https://msbi.ipb-halle.de/~sneumann/DataDump.json
- Nodes: DE
Implemented Profiles
- Description: Automated model construction and genome annotation for large-scale metabolic networks
- Sitemap: https://www.metanetx.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: MobiDB is a database of protein disorder and mobility annotations.
- Sitemap: https://mobidb.org/sitemap.xml
- DataDump: https://mobidb.org/.well-known/protein
- Nodes: IT
Implemented Profiles
- Description: Open License datasets by the NanoSafety Cluster. Ontology IRIs for the JRC representative industrial nanomaterials.
- Sitemap: https://nanocommons.github.io/sitemap.xml
- Nodes: NL
Implemented Profiles
- Description: The NanoSafety Data Interface provides a user-friendly access to the aggregated search index of the (sub)set of eNanoMapper database instances with toxicity studies for nanomaterials.
- Sitemap: https://search.data.enanomapper.net/sitemap.xml
Implemented Profiles
- Keywords: CDR
- Description: The portal for rare diseases and orphan drugs
- Sitemap: https://www.orpha.net/consor/cgi-bin/html/orphanet-googlemap.xml
- Nodes: FR
Implemented Profiles
- Sitemap: https://pairedomicsdata.bioinformatics.nl/sitemap.xml
- Nodes: NL
Implemented Profiles
- Sitemap: https://pcddb.cryst.bbk.ac.uk/sitemap/sitemap.xml
- Nodes: UK
Implemented Profiles
- Keywords: CDR, DDR
- Sitemap: https://www.ebi.ac.uk/pdbe/sitemap.xml
- Nodes: EBI
Implemented Profiles
- Sitemap: https://prosite.expasy.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: The Protein Ensemble Database (PED) is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins (IDPs). Manually curated data of structural ensembles measured with nuclear magnetic resonance spectroscopy, small-angle X-ray scattering, fluorescence resonance energy transfer are annotated in PED. The deposition of structural coordinates can be used for the evaluation of the ensembles, thus supporting the evolution of new modeling methods leading to much improved skills of connecting the characteristic "lack of structure" of IDPs with function. Each entry in PED corresponds to the primary experimental data and to the structural ensembles associated with these data.
- Sitemap: https://proteinensemble.org/sitemap.xml
- Nodes: IT
Implemented Profiles
Implemented Profiles
Implemented Profiles
- Description: A database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow.
- Sitemap: https://psnpbind.org/sitemap.xml
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Description: An unofficial version of Rhea content captured using Bioschemas. Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB. Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants.
- DataDump: https://swel.macs.hw.ac.uk/bioschemas-data/BH2022/rhea.jsonld
- Nodes: CH, NL
Implemented Profiles
- Description: List of European Registry of Materials identifiers used by the RiskGONE project.
- Sitemap: https://h2020-riskgone.github.io/riskgone-materials/sitemap.xml
- Nodes: NL
Implemented Profiles
- Description: Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.
Implemented Profiles
- Sitemap: https://swissmodel.expasy.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: Training material and courses delivered by SIB
- Nodes: CH
Implemented Profiles
- Keywords: CDR
- Sitemap: https://www.uniprot.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Sitemap: https://www.wikipathways.org/sitemap.xml
- Nodes: NL
Implemented Profiles
- DataDump: https://workflowhub.eu/workflows.bioschemas.json
- Nodes: UK
Implemented Profiles
66 ELIXIR resources have Bioschemas markup. Of which there are
- 12 ELIXIR Core Data Resource (CDR)
- 3 ELIXIR Deposition Database Resource (DDR)
- 6 ELIXIR Recommended Interoperability Resource (RIR)
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Description: Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species. It provides an intuitive answer to the question "where is a gene expressed?" and supports research in cancer and agriculture as well as evolutionary biology.
- Sitemap: https://bgee.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Automated model construction and genome annotation for large-scale metabolic networks
- Sitemap: https://www.metanetx.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Sitemap: https://prosite.expasy.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Description: An unofficial version of Rhea content captured using Bioschemas. Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB. Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants.
- DataDump: https://swel.macs.hw.ac.uk/bioschemas-data/BH2022/rhea.jsonld
- Nodes: CH, NL
Implemented Profiles
- Sitemap: https://swissmodel.expasy.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: Training material and courses delivered by SIB
- Nodes: CH
Implemented Profiles
- Keywords: CDR
- Sitemap: https://www.uniprot.org/sitemap.xml
- Nodes: CH
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Sitemap: https://massbank.eu/MassBank/sitemapindex.xml
- DataDump: https://msbi.ipb-halle.de/~sneumann/DataDump.json
- Nodes: DE
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://bio.tools/api/sitemap.xml
- DataDump: https://raw.githubusercontent.com/bio-tools/content/master/datasets/bioschemas-dump.ttl
- Nodes: DK, FR, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Keywords: DDR
- Sitemap: https://www.ebi.ac.uk/biosamples/sitemap.xml
- Nodes: EBI
Implemented Profiles
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
- Description: Bringing together relevant datasets related to COVID-19 for sharing and analysis in an effort to accelerate coronavirus research.
- Sitemap: https://www.covid19dataportal.org/sitemap.xml
- Nodes: EBI
Implemented Profiles
- Description: To enable EMBL to deliver world-leading training in bioinformatics and scientific service provision to the research community, empowering scientists at all career stages to make the most of biological data, and strengthening bioinformatics capacity across the globe.
- Nodes: EBI
Implemented Profiles
- Keywords: CDR
- Description: Classification of protein families
- Sitemap: https://www.ebi.ac.uk/interpro/sitemap/interpro.sitemap.txt
- Nodes: EBI
Implemented Profiles
- Keywords: CDR, DDR
- Sitemap: https://www.ebi.ac.uk/pdbe/sitemap.xml
- Nodes: EBI
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://bio.tools/api/sitemap.xml
- DataDump: https://raw.githubusercontent.com/bio-tools/content/master/datasets/bioschemas-dump.ttl
- Nodes: DK, FR, ES
Implemented Profiles
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://bio.tools/api/sitemap.xml
- DataDump: https://raw.githubusercontent.com/bio-tools/content/master/datasets/bioschemas-dump.ttl
- Nodes: DK, FR, ES
Implemented Profiles
- Sitemap: https://bioschemas.org/sitemap.xml
- Nodes: UK, BE, CH, EBI, ES, FR, Hub, IT, NL, NO, PT, SE
Implemented Profiles
- Sitemap: https://www.france-bioinformatique.fr/sitemap.xml
- Nodes: FR
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Inhibitors of Protein-Protein Interaction Database
- Sitemap: https://ippidb.pasteur.fr/sitemap.xml
- Nodes: FR
Implemented Profiles
- Keywords: CDR
- Description: The portal for rare diseases and orphan drugs
- Sitemap: https://www.orpha.net/consor/cgi-bin/html/orphanet-googlemap.xml
- Nodes: FR
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Sitemap: https://training.galaxyproject.org/sitemap.xml
- Nodes: DE, NL, FR, GR, EE, IT, BE, UK, CZ, CH, NO, SE, ES
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY
Implemented Profiles
- Description: Find the answers to your Research Data Management questions in Life Sciences.
- Sitemap: https://rdmkit.elixir-europe.org/sitemap.xml
- Nodes: EBI, UK, SE, CH, CZ, EE, NO, NL, DK, IL, PT, FI, FR, BE, IT, SI, LU, IE, DE, HU, ES, GR, CY