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RNA DRAFT Profile

Version: 0.2-DRAFT (10 November 2022)


If you spot any errors or omissions with this type, please file an issue in our GitHub.


Key to specification table

CD = Cardinality

Property Expected Type Description CD Controlled Vocabulary Example
Marginality: Minimum.
@context URL Used to provide the context (namespaces) for the JSON-LD file.
Not needed in other serialisations.		 ONE
@type Text Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism.
While it is permissible to provide multiple types, it is preferred to use a single type.		 MANY Schema.org, Bioschemas
@id IRI Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. ONE
dct:conformsTo IRI Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used.
Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example.		 ONE Bioschemas profile versioned URL
Marginality: Recommended.
sameAs URL
 Schema:

URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website.


 MANY
Marginality: Optional.
additionalType URL
 Schema:

An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the ‘typeof’ attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally.


 ONE
alternateName Text
 Schema:

An alias for the item.


 ONE
associatedDisease MedicalCondition
Propertyvalue
URL
 Schema:

Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue.


 ONE
bioChemInteraction BioChemEntity
 Schema:

A BioChemEntity that is known to interact with this item.


 ONE
bioChemSimilarity BioChemEntity
 Schema:

A similar molecular entity, e.g., obtained by fingerprint similarity algorithms.


 ONE
biologicalRole DefinedTerm
 Schema:

A role played by the molecular entity within a biological context.


 ONE
description Text
 Schema:

A description of the item.


 ONE
disambiguatingDescription Text
 Schema:

A sub property of description. A short description of the item used to disambiguate from other, similar items. Information from other properties (in particular, name) may be necessary for the description to be useful for disambiguation.


 ONE
encodesBioChemEntity BioChemEntity
 Schema:

Another BioChemEntity encoded by this one. Inverse property:isEncodedByBioChemEntity.


 ONE
hasBioChemEntityPart BioChemEntity
 Schema:

Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property:isPartOfBioChemEntity.


 ONE
hasMolecularFunction DefinedTerm
Propertyvalue
URL
 Schema:

Molecular function performed by this BioChemEntity; please use PropertyValue if you want to include any evidence.


 ONE
hasRepresentation PropertyValue
Text
URL
 Schema:

A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image.


 ONE
hasSequence Text
 Schema:

Nucleotide or amino acid sequence.


 ONE
hasSequenceAnnotation Propertyvalue
SequenceAnnotation
 Schema:

Pointer to a sequence annotation; please use PropertyValue if you want to include any evidence.


 ONE
identifier PropertyValue
Text
URL
 Schema:

The identifier property represents any kind of identifier for any kind ofThing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. Seebackground notesfor more details.


 ONE
image ImageObject
URL
 Schema:

An image of the item. This can be aURLor a fully describedImageObject.


 ONE
isCodingRNA Boolean
 Schema:

Indicates whether or not this Rna is a coding one.


 ONE
isEncodedByBioChemEntity Dna
Gene
RNA
 Schema:

Another BioChemEntity encoding by this one. Inverse property:encodesBioChemEntity.


 ONE
isInvolvedInBiologicalProcess DefinedTerm
Propertyvalue
URL
 Schema:

Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence.


 ONE
isLocatedInSubcellularLocation DefinedTerm
Propertyvalue
URL
 Schema:

Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence.


 ONE
isMatchedBy SequenceMatchingModel
 Schema:

A model matching this BioChemEntity.


 ONE
isPartOfBioChemEntity BioChemEntity
 Schema:

Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property:hasBioChemEntityPart.


 ONE
name Text
 Schema:

The name of the item.


 ONE
taxonomicRange DefinedTerm
Taxon
Text
URL
 Schema:

The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity.


 ONE
url URL
 Schema:

URL of the item.


 ONE